PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009800520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 510aa    MW: 57305.1 Da    PI: 6.917
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009800520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.48.6e-1091505051374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++ LlecA a+s ++l +a+++L +l ++asp+g +  +R++ayf++A+a+r+ +s+ ++++ l   ++          a+++f+++sP++kf+
  XP_009800520.1 150 LRTHLLECAVAISVDNLGEAHRMLLELTQMASPYGqSCAERVVAYFAKAMASRVINSWLGICSPLINYKS-------IHCAFQVFNNISPFIKFA 237
                     5789*******************************6678**********************976644433.......467999************ PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+t NqaIlea+++ +rvHiiD di+qGlQWpaL++ La+R egpp++ +Tg+g     s e l etg++L++fA++lg++fef++ + k++ +l
  XP_009800520.1 238 HFTSNQAILEAFHRRDRVHIIDVDIMQGLQWPALFHILATRIEGPPHVTMTGMGT----SMELLIETGKQLSSFAKRLGMSFEFHP-IGKKIGEL 327
                     *******************************************************....9**************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++ +L++++gEa+a+++    h+l+d +++  +    +++l+ +lsP+v+++veqe+ + ++sFl+rf+ +l+yys++fdsl a l ++++ r++
  XP_009800520.1 328 DITMLQIRRGEAIAIHWLQ--HSLYDATGPDWK----TMRLLHELSPRVITLVEQEIPL-GGSFLDRFVGSLHYYSTIFDSLGAFLQSDDSSRHS 415
                     ******************9..999999999888....**********************.789******************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+ ll rei n++a  g++r+ +  ++++Wr+ l++ GF +vp+s++a++qa+l+l++++ ++gy++ + +g+l lgWkd +L+++SaW+
  XP_009800520.1 416 VEHGLLYREINNILAIGGSARNGE-DKFKHWRSELSRNGFMQVPMSTNAMAQAQLILNMFPpVHGYSLVQGDGTLKLGWKDTSLYTASAWT 505
                     ********************7665.55***************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.356124484IPR005202Transcription factor GRAS
PfamPF035143.0E-106150505IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MLKGGSEVIH QNGALDHIIQ QSNEQWDCAS LVGFPGITSA PNYPSKPVTE NRGNNPERNE  60
LSQWVEHVTR QLIEDLPENE TQAMTYQDNI VPTLLGELRP KKVARRNSSE NLGQQHQWNS  120
HDLARDKNNT NINETGAKGM NRLDDQGLNL RTHLLECAVA ISVDNLGEAH RMLLELTQMA  180
SPYGQSCAER VVAYFAKAMA SRVINSWLGI CSPLINYKSI HCAFQVFNNI SPFIKFAHFT  240
SNQAILEAFH RRDRVHIIDV DIMQGLQWPA LFHILATRIE GPPHVTMTGM GTSMELLIET  300
GKQLSSFAKR LGMSFEFHPI GKKIGELDIT MLQIRRGEAI AIHWLQHSLY DATGPDWKTM  360
RLLHELSPRV ITLVEQEIPL GGSFLDRFVG SLHYYSTIFD SLGAFLQSDD SSRHSVEHGL  420
LYREINNILA IGGSARNGED KFKHWRSELS RNGFMQVPMS TNAMAQAQLI LNMFPPVHGY  480
SLVQGDGTLK LGWKDTSLYT ASAWTSPNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-501545048374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800520.10.0PREDICTED: protein SCARECROW-like
SwissprotQ9M3841e-142SCR_ARATH; Protein SCARECROW
TrEMBLM1DDZ60.0M1DDZ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000875040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122912023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-143GRAS family protein